Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.18□□□□□ -0.14
Vti1aO89116 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.18□□□□□ -0.14
Vti1aO89116 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Vti1aO89116 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Gm27516-201ENSMUST00000184237 98 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Gm38002-201ENSMUST00000193255 180 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Gm19309-201ENSMUST00000218295 205 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Gm9257-201ENSMUST00000221254 232 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Vti1aO89116 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.18□□□□□ -0.14
Vti1aO89116 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vti1aO89116 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.17□□□□□ -0.14
Vti1aO89116 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC14.17□□□□□ -0.14
Vti1aO89116 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Gm37922-201ENSMUST00000195596 455 ntBASIC14.17□□□□□ -0.14
Vti1aO89116 Gm42627-201ENSMUST00000197347 224 ntBASIC14.17□□□□□ -0.14
Vti1aO89116 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Vti1aO89116 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.17□□□□□ -0.14
Vti1aO89116 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.17□□□□□ -0.14
Vti1aO89116 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Vti1aO89116 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.17□□□□□ -0.14
Vti1aO89116 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.17□□□□□ -0.14
Vti1aO89116 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vti1aO89116 Gm9924-202ENSMUST00000192760 2311 ntBASIC14.16□□□□□ -0.14
Vti1aO89116 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.16□□□□□ -0.14
Vti1aO89116 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.16□□□□□ -0.14
Vti1aO89116 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.16□□□□□ -0.14
Vti1aO89116 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Gm27243-201ENSMUST00000183964 521 ntBASIC14.16□□□□□ -0.14
Vti1aO89116 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.16□□□□□ -0.14
Vti1aO89116 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vti1aO89116 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms