Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Chd3B1AR17 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.86□□□□□ -0.35
Chd3B1AR17 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gm11591-201ENSMUST00000120063 702 ntBASIC12.86□□□□□ -0.35
Chd3B1AR17 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gm2991-201ENSMUST00000173338 480 ntBASIC12.86□□□□□ -0.35
Chd3B1AR17 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gm19163-201ENSMUST00000223313 780 ntBASIC12.86□□□□□ -0.35
Chd3B1AR17 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
Chd3B1AR17 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Gm44775-201ENSMUST00000207266 1456 ntBASIC12.86□□□□□ -0.35
Chd3B1AR17 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.86□□□□□ -0.35
Chd3B1AR17 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
Chd3B1AR17 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm2231-201ENSMUST00000125661 612 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm25927-201ENSMUST00000175058 117 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm6334-201ENSMUST00000207083 228 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm9257-201ENSMUST00000221254 232 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm19931-201ENSMUST00000198920 368 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.85□□□□□ -0.35
Chd3B1AR17 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Gm7046-201ENSMUST00000221351 977 ntBASIC12.85□□□□□ -0.35
Chd3B1AR17 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Chd3B1AR17 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Chd3B1AR17 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Chd3B1AR17 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Chd3B1AR17 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Chd3B1AR17 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Chd3B1AR17 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm11658-201ENSMUST00000120913 1008 ntBASIC12.84□□□□□ -0.35
Chd3B1AR17 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm2467-201ENSMUST00000182266 1010 ntBASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm6981-201ENSMUST00000182467 1008 ntBASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm6621-201ENSMUST00000193251 772 ntBASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm37008-201ENSMUST00000195712 319 ntBASIC12.84□□□□□ -0.35
Chd3B1AR17 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.84□□□□□ -0.35
Chd3B1AR17 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms