Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Gm6263-201ENSMUST00000120029 1342 ntBASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Gm11524-201ENSMUST00000119349 807 ntBASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Gm29667-201ENSMUST00000190817 490 ntBASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.66□□□□□ -0.22
Cdk5rap3Q99LM2 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Gm15487-201ENSMUST00000122373 465 ntBASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Gm29608-201ENSMUST00000190444 463 ntBASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Gm9797-201ENSMUST00000052902 613 ntBASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Cdk5rap3Q99LM2 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Gm27838-201ENSMUST00000184829 128 ntBASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Cdk5rap3Q99LM2 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.63□□□□□ -0.23
Cdk5rap3Q99LM2 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdk5rap3Q99LM2 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Cdk5rap3Q99LM2 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdk5rap3Q99LM2 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Cdk5rap3Q99LM2 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms