Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 BC043934-202ENSMUST00000185694 2356 ntBASIC12.57□□□□□ -0.4
Lire1P11260 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Gm43636-201ENSMUST00000201501 2235 ntBASIC12.57□□□□□ -0.4
Lire1P11260 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Lire1P11260 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Lire1P11260 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Lire1P11260 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.56□□□□□ -0.4
Lire1P11260 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.56□□□□□ -0.4
Lire1P11260 Gm12585-201ENSMUST00000117307 290 ntBASIC12.56□□□□□ -0.4
Lire1P11260 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC12.56□□□□□ -0.4
Lire1P11260 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.56□□□□□ -0.4
Lire1P11260 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Gm9908-201ENSMUST00000211534 448 ntBASIC12.56□□□□□ -0.4
Lire1P11260 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Lire1P11260 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.56□□□□□ -0.4
Lire1P11260 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Lire1P11260 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Lire1P11260 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC12.56□□□□□ -0.4
Lire1P11260 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.56□□□□□ -0.4
Lire1P11260 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Lire1P11260 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.55□□□□□ -0.4
Lire1P11260 Gm28760-201ENSMUST00000185995 736 ntBASIC12.55□□□□□ -0.4
Lire1P11260 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.55□□□□□ -0.4
Lire1P11260 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Gm9797-201ENSMUST00000052902 613 ntBASIC12.55□□□□□ -0.4
Lire1P11260 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC12.55□□□□□ -0.4
Lire1P11260 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.55□□□□□ -0.4
Lire1P11260 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lire1P11260 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.54□□□□□ -0.4
Lire1P11260 AC124577.2-201ENSMUST00000217413 2420 ntBASIC12.54□□□□□ -0.4
Lire1P11260 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Lire1P11260 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Nap1l2-201ENSMUST00000121720 2465 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Lire1P11260 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lire1P11260 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.54□□□□□ -0.4
Lire1P11260 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.54□□□□□ -0.4
Lire1P11260 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.54□□□□□ -0.4
Lire1P11260 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Lire1P11260 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.54□□□□□ -0.4
Lire1P11260 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lire1P11260 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms