Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scaf4Q6PFF0 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Scaf4Q6PFF0 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scaf4Q6PFF0 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scaf4Q6PFF0 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scaf4Q6PFF0 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Scaf4Q6PFF0 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21■□□□□ 0.95
Scaf4Q6PFF0 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scaf4Q6PFF0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scaf4Q6PFF0 Gm44428-201ENSMUST00000204474 874 ntBASIC21■□□□□ 0.95
Scaf4Q6PFF0 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scaf4Q6PFF0 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scaf4Q6PFF0 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scaf4Q6PFF0 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Scaf4Q6PFF0 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Scaf4Q6PFF0 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Scaf4Q6PFF0 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scaf4Q6PFF0 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scaf4Q6PFF0 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Scaf4Q6PFF0 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scaf4Q6PFF0 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scaf4Q6PFF0 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scaf4Q6PFF0 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Scaf4Q6PFF0 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scaf4Q6PFF0 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scaf4Q6PFF0 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scaf4Q6PFF0 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scaf4Q6PFF0 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
Scaf4Q6PFF0 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.93■□□□□ 0.94
Scaf4Q6PFF0 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.93■□□□□ 0.94
Scaf4Q6PFF0 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scaf4Q6PFF0 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scaf4Q6PFF0 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scaf4Q6PFF0 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scaf4Q6PFF0 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scaf4Q6PFF0 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.92■□□□□ 0.94
Scaf4Q6PFF0 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scaf4Q6PFF0 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Scaf4Q6PFF0 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scaf4Q6PFF0 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scaf4Q6PFF0 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scaf4Q6PFF0 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scaf4Q6PFF0 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
Scaf4Q6PFF0 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scaf4Q6PFF0 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scaf4Q6PFF0 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scaf4Q6PFF0 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.88■□□□□ 0.93
Scaf4Q6PFF0 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Scaf4Q6PFF0 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Scaf4Q6PFF0 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scaf4Q6PFF0 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms