Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col7a1Q63870 Gm43137-201ENSMUST00000198052 594 ntBASIC18.44■□□□□ 0.54
Col7a1Q63870 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Col7a1Q63870 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col7a1Q63870 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col7a1Q63870 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col7a1Q63870 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col7a1Q63870 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col7a1Q63870 Gm43173-201ENSMUST00000202246 593 ntBASIC18.43■□□□□ 0.54
Col7a1Q63870 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Col7a1Q63870 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col7a1Q63870 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col7a1Q63870 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Col7a1Q63870 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col7a1Q63870 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Col7a1Q63870 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col7a1Q63870 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col7a1Q63870 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col7a1Q63870 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.42■□□□□ 0.54
Col7a1Q63870 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
Col7a1Q63870 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.41■□□□□ 0.54
Col7a1Q63870 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Col7a1Q63870 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Col7a1Q63870 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col7a1Q63870 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.41■□□□□ 0.54
Col7a1Q63870 Gm42642-201ENSMUST00000200683 355 ntBASIC18.41■□□□□ 0.54
Col7a1Q63870 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col7a1Q63870 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col7a1Q63870 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col7a1Q63870 Gm7199-201ENSMUST00000118327 1485 ntBASIC18.4■□□□□ 0.54
Col7a1Q63870 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col7a1Q63870 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col7a1Q63870 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Col7a1Q63870 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.4■□□□□ 0.54
Col7a1Q63870 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.4■□□□□ 0.54
Col7a1Q63870 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col7a1Q63870 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Col7a1Q63870 Gm22325-201ENSMUST00000158904 308 ntBASIC18.39■□□□□ 0.54
Col7a1Q63870 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.39■□□□□ 0.54
Col7a1Q63870 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col7a1Q63870 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.39■□□□□ 0.53
Col7a1Q63870 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.39■□□□□ 0.53
Col7a1Q63870 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col7a1Q63870 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col7a1Q63870 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col7a1Q63870 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col7a1Q63870 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Col7a1Q63870 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Col7a1Q63870 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col7a1Q63870 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col7a1Q63870 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col7a1Q63870 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.38■□□□□ 0.53
Col7a1Q63870 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.38■□□□□ 0.53
Col7a1Q63870 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.38■□□□□ 0.53
Col7a1Q63870 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Col7a1Q63870 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC18.38■□□□□ 0.53
Col7a1Q63870 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col7a1Q63870 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col7a1Q63870 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.37■□□□□ 0.53
Col7a1Q63870 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col7a1Q63870 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col7a1Q63870 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col7a1Q63870 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.36■□□□□ 0.53
Col7a1Q63870 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col7a1Q63870 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Col7a1Q63870 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col7a1Q63870 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col7a1Q63870 Zxda-201ENSMUST00000117281 2621 ntBASIC18.35■□□□□ 0.53
Col7a1Q63870 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Col7a1Q63870 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col7a1Q63870 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col7a1Q63870 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC18.35■□□□□ 0.53
Col7a1Q63870 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col7a1Q63870 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.35■□□□□ 0.53
Col7a1Q63870 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.35■□□□□ 0.53
Col7a1Q63870 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col7a1Q63870 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col7a1Q63870 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Col7a1Q63870 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col7a1Q63870 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col7a1Q63870 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col7a1Q63870 Gm26833-201ENSMUST00000180899 440 ntBASIC18.33■□□□□ 0.53
Col7a1Q63870 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18.33■□□□□ 0.53
Col7a1Q63870 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col7a1Q63870 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col7a1Q63870 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.33■□□□□ 0.52
Col7a1Q63870 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Col7a1Q63870 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col7a1Q63870 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col7a1Q63870 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Col7a1Q63870 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.32■□□□□ 0.52
Col7a1Q63870 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Col7a1Q63870 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col7a1Q63870 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC18.32■□□□□ 0.52
Col7a1Q63870 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.31■□□□□ 0.52
Col7a1Q63870 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col7a1Q63870 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col7a1Q63870 Cdc34b-202ENSMUST00000188741 1252 ntBASIC18.31■□□□□ 0.52
Col7a1Q63870 Gm8493-201ENSMUST00000196881 489 ntBASIC18.31■□□□□ 0.52
Col7a1Q63870 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms