Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb3O54879 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.64■□□□□ 0.41
Hmgb3O54879 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb3O54879 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb3O54879 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Hmgb3O54879 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Hmgb3O54879 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Hmgb3O54879 AC164433.2-201ENSMUST00000226346 1701 ntBASIC17.63■□□□□ 0.41
Hmgb3O54879 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb3O54879 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb3O54879 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC17.62■□□□□ 0.41
Hmgb3O54879 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb3O54879 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb3O54879 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb3O54879 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb3O54879 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb3O54879 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb3O54879 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb3O54879 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Hmgb3O54879 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb3O54879 AC115037.1-201ENSMUST00000223391 2173 ntBASIC17.61■□□□□ 0.41
Hmgb3O54879 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb3O54879 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb3O54879 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Hmgb3O54879 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb3O54879 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC17.6■□□□□ 0.41
Hmgb3O54879 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb3O54879 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb3O54879 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb3O54879 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
Hmgb3O54879 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb3O54879 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Hmgb3O54879 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb3O54879 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb3O54879 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb3O54879 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
Hmgb3O54879 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb3O54879 Nkain2-201ENSMUST00000092602 558 ntBASIC17.59■□□□□ 0.41
Hmgb3O54879 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Hmgb3O54879 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb3O54879 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Hmgb3O54879 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb3O54879 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
Hmgb3O54879 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb3O54879 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb3O54879 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb3O54879 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.58■□□□□ 0.4
Hmgb3O54879 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb3O54879 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Hmgb3O54879 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Hmgb3O54879 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.57■□□□□ 0.4
Hmgb3O54879 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Hmgb3O54879 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb3O54879 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Hmgb3O54879 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Hmgb3O54879 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb3O54879 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb3O54879 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb3O54879 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Hmgb3O54879 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb3O54879 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb3O54879 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb3O54879 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb3O54879 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb3O54879 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Hmgb3O54879 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Hmgb3O54879 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Hmgb3O54879 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Hmgb3O54879 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Hmgb3O54879 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Hmgb3O54879 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Hmgb3O54879 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Hmgb3O54879 Gm28731-201ENSMUST00000185564 1569 ntBASIC17.53■□□□□ 0.4
Hmgb3O54879 Notumos-201ENSMUST00000151998 2659 ntBASIC17.53■□□□□ 0.4
Hmgb3O54879 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Hmgb3O54879 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Hmgb3O54879 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Hmgb3O54879 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Hmgb3O54879 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Hmgb3O54879 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Hmgb3O54879 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Hmgb3O54879 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms