Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Gm16479-201ENSMUST00000121706 932 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Gm7584-201ENSMUST00000175829 940 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Gm3961-201ENSMUST00000204425 994 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Olfr284-202ENSMUST00000206647 966 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Gm43273-201ENSMUST00000199649 2594 ntBASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim54Q9ERP3 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm13350-201ENSMUST00000120519 479 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm13342-201ENSMUST00000121055 207 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm16379-201ENSMUST00000161469 348 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm8762-201ENSMUST00000193486 339 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm10608-202ENSMUST00000213924 676 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 AC134335.2-201ENSMUST00000227660 440 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm24526-201ENSMUST00000082921 158 ntBASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim54Q9ERP3 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trim54Q9ERP3 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Gm11591-201ENSMUST00000120063 702 ntBASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Gm6334-201ENSMUST00000207083 228 ntBASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Trim54Q9ERP3 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim54Q9ERP3 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trim54Q9ERP3 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms