Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Gm12928-201ENSMUST00000117115 573 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Gm8515-201ENSMUST00000194852 576 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 AC154276.1-201ENSMUST00000228874 1299 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Gm45706-201ENSMUST00000213063 2136 ntBASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Ddx56Q9D0R4 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm14928-201ENSMUST00000120198 477 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm6152-201ENSMUST00000151704 340 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm23984-201ENSMUST00000157139 203 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm28911-201ENSMUST00000188837 117 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm18473-201ENSMUST00000220543 868 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 AC159006.1-201ENSMUST00000226396 258 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Gm6180-201ENSMUST00000065243 498 ntBASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Ddx56Q9D0R4 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms