Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx28Q9CWT6 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm13385-201ENSMUST00000121089 220 ntBASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm27306-201ENSMUST00000183970 107 ntBASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx28Q9CWT6 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx28Q9CWT6 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx28Q9CWT6 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Ddx28Q9CWT6 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx28Q9CWT6 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx28Q9CWT6 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.37□□□□□ -0.43
Ddx28Q9CWT6 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms