Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm9109-201ENSMUST00000120254 1405 ntBASIC14.78□□□□□ -0.04
Smc1aQ9CU62 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm12742-201ENSMUST00000117326 410 ntBASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm18905-201ENSMUST00000205454 928 ntBASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gm45841-201ENSMUST00000207700 164 ntBASIC14.78□□□□□ -0.04
Smc1aQ9CU62 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Smc1aQ9CU62 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Smc1aQ9CU62 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Gm37714-201ENSMUST00000194742 342 ntBASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Smc1aQ9CU62 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gm12390-201ENSMUST00000117897 397 ntBASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gm8835-201ENSMUST00000173096 1169 ntBASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gm44608-201ENSMUST00000206827 855 ntBASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms