Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Gm44065-201ENSMUST00000203184 3527 ntBASIC18.54■□□□□ 0.56
Usp47Q8BY87 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Gm6023-201ENSMUST00000118217 606 ntBASIC18.54■□□□□ 0.56
Usp47Q8BY87 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC18.54■□□□□ 0.56
Usp47Q8BY87 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usp47Q8BY87 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Gm10176-201ENSMUST00000159707 2264 ntBASIC18.53■□□□□ 0.56
Usp47Q8BY87 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Gm44094-201ENSMUST00000204703 2030 ntBASIC18.53■□□□□ 0.56
Usp47Q8BY87 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Gm24548-201ENSMUST00000158650 108 ntBASIC18.53■□□□□ 0.56
Usp47Q8BY87 Gm8099-201ENSMUST00000200510 742 ntBASIC18.53■□□□□ 0.56
Usp47Q8BY87 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC18.53■□□□□ 0.56
Usp47Q8BY87 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usp47Q8BY87 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Usp47Q8BY87 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Usp47Q8BY87 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Gm18584-201ENSMUST00000203098 964 ntBASIC18.52■□□□□ 0.55
Usp47Q8BY87 Olfr284-202ENSMUST00000206647 966 ntBASIC18.52■□□□□ 0.55
Usp47Q8BY87 Gm5781-201ENSMUST00000219792 443 ntBASIC18.52■□□□□ 0.55
Usp47Q8BY87 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp47Q8BY87 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Usp47Q8BY87 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Gm13786-201ENSMUST00000122371 333 ntBASIC18.51■□□□□ 0.55
Usp47Q8BY87 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Gm27501-201ENSMUST00000183599 107 ntBASIC18.51■□□□□ 0.55
Usp47Q8BY87 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC18.51■□□□□ 0.55
Usp47Q8BY87 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms