Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm14730-201ENSMUST00000122378 1045 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm7498-201ENSMUST00000203282 1084 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm17795-201ENSMUST00000214505 757 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Gm17330-201ENSMUST00000221047 165 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp39Q3TIX9 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm15823-201ENSMUST00000064305 670 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm6180-201ENSMUST00000065243 498 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usp39Q3TIX9 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm12403-201ENSMUST00000121384 959 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.8□□□□□ -0.36
Usp39Q3TIX9 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms