Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Gm16026-204ENSMUST00000162652 683 ntBASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Trem1Q9JKE2 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm10327-201ENSMUST00000105222 1002 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm45098-201ENSMUST00000207179 657 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 AC131709.1-201ENSMUST00000224731 1180 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 AC158538.1-201ENSMUST00000225870 294 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gm10154-201ENSMUST00000084445 354 ntBASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trem1Q9JKE2 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trem1Q9JKE2 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 96.9 ms