Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Gm5555-201ENSMUST00000120352 1111 ntBASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Gm8768-201ENSMUST00000220020 826 ntBASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Scn4aQ9ER60 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Scn4aQ9ER60 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Scn4aQ9ER60 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Scn4aQ9ER60 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Scn4aQ9ER60 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Scn4aQ9ER60 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Scn4aQ9ER60 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Mir6407-201ENSMUST00000184510 101 ntBASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm7904-201ENSMUST00000217049 465 ntBASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm29763-201ENSMUST00000205306 616 ntBASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 AC154572.1-201ENSMUST00000226098 1204 ntBASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn4aQ9ER60 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Gng5-ps-201ENSMUST00000120931 205 ntBASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Scn4aQ9ER60 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm8731-201ENSMUST00000118088 412 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm11836-201ENSMUST00000121022 441 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm9507-202ENSMUST00000180157 654 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Ighv5-11-201ENSMUST00000193354 371 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Trav11n-201ENSMUST00000200113 343 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 AC115122.1-201ENSMUST00000224850 1040 ntBASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Scn4aQ9ER60 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms