Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC14.31□□□□□ -0.12
RaraP11416 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.31□□□□□ -0.12
RaraP11416 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
RaraP11416 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RaraP11416 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RaraP11416 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RaraP11416 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Gm8798-201ENSMUST00000211877 1661 ntBASIC14.3□□□□□ -0.12
RaraP11416 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
RaraP11416 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
RaraP11416 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.3□□□□□ -0.12
RaraP11416 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Gm24694-201ENSMUST00000180054 110 ntBASIC14.3□□□□□ -0.12
RaraP11416 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
RaraP11416 Mir7684-201ENSMUST00000183858 60 ntBASIC14.3□□□□□ -0.12
RaraP11416 Gm27663-201ENSMUST00000184839 110 ntBASIC14.3□□□□□ -0.12
RaraP11416 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Hist1h2al-201ENSMUST00000091708 339 ntBASIC14.3□□□□□ -0.12
RaraP11416 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
RaraP11416 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
RaraP11416 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
RaraP11416 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 AC241621.2-201ENSMUST00000223991 2151 ntBASIC14.3□□□□□ -0.12
RaraP11416 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.3□□□□□ -0.12
RaraP11416 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RaraP11416 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RaraP11416 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Gm22189-201ENSMUST00000103822 86 ntBASIC14.29□□□□□ -0.12
RaraP11416 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RaraP11416 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
RaraP11416 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.29□□□□□ -0.12
RaraP11416 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.29□□□□□ -0.12
RaraP11416 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.29□□□□□ -0.12
RaraP11416 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RaraP11416 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Mir8102-201ENSMUST00000184148 139 ntBASIC14.29□□□□□ -0.12
RaraP11416 Gm28760-201ENSMUST00000185995 736 ntBASIC14.29□□□□□ -0.12
RaraP11416 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.29□□□□□ -0.12
RaraP11416 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 AC073947.1-201ENSMUST00000216991 649 ntBASIC14.29□□□□□ -0.12
RaraP11416 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 AC134335.2-201ENSMUST00000227660 440 ntBASIC14.29□□□□□ -0.12
RaraP11416 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC14.29□□□□□ -0.12
RaraP11416 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.29□□□□□ -0.12
RaraP11416 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC14.29□□□□□ -0.12
RaraP11416 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RaraP11416 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RaraP11416 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms