Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC12.62□□□□□ -0.39
Lire1P11260 Gm14451-201ENSMUST00000121581 1542 ntBASIC12.62□□□□□ -0.39
Lire1P11260 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Lire1P11260 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.62□□□□□ -0.39
Lire1P11260 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lire1P11260 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.62□□□□□ -0.39
Lire1P11260 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
Lire1P11260 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
Lire1P11260 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.61□□□□□ -0.39
Lire1P11260 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Lire1P11260 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.61□□□□□ -0.39
Lire1P11260 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.61□□□□□ -0.39
Lire1P11260 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.61□□□□□ -0.39
Lire1P11260 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Gm25857-201ENSMUST00000082788 129 ntBASIC12.61□□□□□ -0.39
Lire1P11260 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC12.61□□□□□ -0.39
Lire1P11260 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lire1P11260 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.6□□□□□ -0.39
Lire1P11260 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Lire1P11260 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Gm23984-201ENSMUST00000157139 203 ntBASIC12.6□□□□□ -0.39
Lire1P11260 Gm42612-201ENSMUST00000197986 623 ntBASIC12.6□□□□□ -0.39
Lire1P11260 Gm43170-201ENSMUST00000199827 612 ntBASIC12.6□□□□□ -0.39
Lire1P11260 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.6□□□□□ -0.39
Lire1P11260 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.6□□□□□ -0.39
Lire1P11260 AC149294.4-201ENSMUST00000227870 882 ntBASIC12.6□□□□□ -0.39
Lire1P11260 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Lire1P11260 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lire1P11260 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Lire1P11260 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC12.59□□□□□ -0.39
Lire1P11260 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 74 ms