Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cpsf3Q9QXK7 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Gm16177-201ENSMUST00000120728 718 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Gm4271-201ENSMUST00000174444 973 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Gm5466-201ENSMUST00000119395 1890 ntBASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Cpsf3Q9QXK7 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 AC139054.1-201ENSMUST00000226898 1598 ntBASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm13226-201ENSMUST00000117838 404 ntBASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm13369-201ENSMUST00000119442 987 ntBASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Mir7085-201ENSMUST00000184353 66 ntBASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Matn2-206ENSMUST00000228570 2798 ntBASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cpsf3Q9QXK7 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Cpsf3Q9QXK7 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms