Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp47Q8BY87 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC18.61■□□□□ 0.57
Usp47Q8BY87 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Gm8798-201ENSMUST00000211877 1661 ntBASIC18.61■□□□□ 0.57
Usp47Q8BY87 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Ighv8-10-201ENSMUST00000199579 358 ntBASIC18.61■□□□□ 0.57
Usp47Q8BY87 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp47Q8BY87 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC18.6■□□□□ 0.57
Usp47Q8BY87 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm12329-201ENSMUST00000120829 1007 ntBASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm16379-201ENSMUST00000161469 348 ntBASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm8762-201ENSMUST00000193486 339 ntBASIC18.6■□□□□ 0.57
Usp47Q8BY87 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm38158-201ENSMUST00000194617 339 ntBASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Gm45779-201ENSMUST00000212189 4064 ntBASIC18.6■□□□□ 0.57
Usp47Q8BY87 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Usp47Q8BY87 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC18.59■□□□□ 0.57
Usp47Q8BY87 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Gm6203-201ENSMUST00000209575 1342 ntBASIC18.59■□□□□ 0.57
Usp47Q8BY87 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usp47Q8BY87 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Acot6-202ENSMUST00000222921 3622 ntBASIC18.58■□□□□ 0.57
Usp47Q8BY87 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC18.58■□□□□ 0.57
Usp47Q8BY87 Gm5940-201ENSMUST00000117582 1068 ntBASIC18.58■□□□□ 0.57
Usp47Q8BY87 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Mir8109-201ENSMUST00000184375 117 ntBASIC18.58■□□□□ 0.57
Usp47Q8BY87 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Gm44974-201ENSMUST00000206387 1279 ntBASIC18.58■□□□□ 0.57
Usp47Q8BY87 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Usp47Q8BY87 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Gm7399-201ENSMUST00000032395 858 ntBASIC18.58■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 92.9 ms