Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trim27Q62158 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim27Q62158 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC16.25■□□□□ 0.19
Trim27Q62158 Gm11918-201ENSMUST00000121660 179 ntBASIC16.25■□□□□ 0.19
Trim27Q62158 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Proscos-202ENSMUST00000178990 666 ntBASIC16.25■□□□□ 0.19
Trim27Q62158 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.25■□□□□ 0.19
Trim27Q62158 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Gm15222-202ENSMUST00000228667 1726 ntBASIC16.25■□□□□ 0.19
Trim27Q62158 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim27Q62158 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trim27Q62158 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trim27Q62158 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trim27Q62158 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC16.24■□□□□ 0.19
Trim27Q62158 Gm44985-201ENSMUST00000206202 1016 ntBASIC16.24■□□□□ 0.19
Trim27Q62158 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC16.24■□□□□ 0.19
Trim27Q62158 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trim27Q62158 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC16.24■□□□□ 0.19
Trim27Q62158 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim27Q62158 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC16.23■□□□□ 0.19
Trim27Q62158 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC16.23■□□□□ 0.19
Trim27Q62158 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim27Q62158 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC16.23■□□□□ 0.19
Trim27Q62158 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Gm16202-201ENSMUST00000117532 544 ntBASIC16.23■□□□□ 0.19
Trim27Q62158 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim27Q62158 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim27Q62158 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim27Q62158 Gm9794-201ENSMUST00000202370 423 ntBASIC16.23■□□□□ 0.19
Trim27Q62158 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC16.23■□□□□ 0.19
Trim27Q62158 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trim27Q62158 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trim27Q62158 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim27Q62158 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim27Q62158 Gm38042-201ENSMUST00000191614 5208 ntBASIC16.22■□□□□ 0.19
Trim27Q62158 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Trim27Q62158 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC16.22■□□□□ 0.19
Trim27Q62158 Gm42863-201ENSMUST00000197875 2958 ntBASIC16.22■□□□□ 0.19
Trim27Q62158 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim27Q62158 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms