Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Rfx1P48377 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC15.82■□□□□ 0.12
Rfx1P48377 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Mir874-201ENSMUST00000104769 76 ntBASIC15.82■□□□□ 0.12
Rfx1P48377 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Rfx1P48377 Gm25948-201ENSMUST00000175334 112 ntBASIC15.82■□□□□ 0.12
Rfx1P48377 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.82■□□□□ 0.12
Rfx1P48377 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Rfx1P48377 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Rfx1P48377 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Rfx1P48377 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Rfx1P48377 Mir449b-201ENSMUST00000104833 80 ntBASIC15.81■□□□□ 0.12
Rfx1P48377 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Rfx1P48377 Gm7820-201ENSMUST00000121012 1052 ntBASIC15.81■□□□□ 0.12
Rfx1P48377 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC15.81■□□□□ 0.12
Rfx1P48377 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.81■□□□□ 0.12
Rfx1P48377 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.81■□□□□ 0.12
Rfx1P48377 Gm38294-201ENSMUST00000192831 381 ntBASIC15.81■□□□□ 0.12
Rfx1P48377 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC15.81■□□□□ 0.12
Rfx1P48377 Gm44771-201ENSMUST00000206975 626 ntBASIC15.81■□□□□ 0.12
Rfx1P48377 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Rfx1P48377 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Rfx1P48377 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC15.81■□□□□ 0.12
Rfx1P48377 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Rfx1P48377 Gm42748-201ENSMUST00000199354 2341 ntBASIC15.8■□□□□ 0.12
Rfx1P48377 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Rfx1P48377 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 AC161252.3-201ENSMUST00000225465 1549 ntBASIC15.8■□□□□ 0.12
Rfx1P48377 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm15693-201ENSMUST00000120470 637 ntBASIC15.8■□□□□ 0.12
Rfx1P48377 Gm11594-201ENSMUST00000122313 162 ntBASIC15.8■□□□□ 0.12
Rfx1P48377 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Rfx1P48377 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.8■□□□□ 0.12
Rfx1P48377 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Rfx1P48377 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Rfx1P48377 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Rfx1P48377 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms