Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.77■□□□□ 0.11
Smarce1O54941 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.11
Smarce1O54941 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Smarce1O54941 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC15.76■□□□□ 0.11
Smarce1O54941 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Smarce1O54941 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.76■□□□□ 0.11
Smarce1O54941 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Smarce1O54941 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Smarce1O54941 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC15.75■□□□□ 0.11
Smarce1O54941 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Smarce1O54941 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
Smarce1O54941 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC15.75■□□□□ 0.11
Smarce1O54941 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.75■□□□□ 0.11
Smarce1O54941 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
Smarce1O54941 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smarce1O54941 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC15.75■□□□□ 0.11
Smarce1O54941 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Smarce1O54941 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Smarce1O54941 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC15.74■□□□□ 0.11
Smarce1O54941 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 AC139580.1-202ENSMUST00000223574 928 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 CT573086.1-201ENSMUST00000227202 1074 ntBASIC15.74■□□□□ 0.11
Smarce1O54941 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Smarce1O54941 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.74■□□□□ 0.11
Smarce1O54941 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smarce1O54941 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms