Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Prpf40aQ9R1C7 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Mir7654-201ENSMUST00000185082 70 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm6473-201ENSMUST00000188572 1210 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm18018-201ENSMUST00000198273 408 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gtpbp10-211ENSMUST00000198799 648 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Prpf40aQ9R1C7 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gm38144-201ENSMUST00000192790 465 ntBASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gm8515-201ENSMUST00000194852 576 ntBASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Prpf40aQ9R1C7 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms