Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Cdk7-205ENSMUST00000225990 1159 ntBASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Vps28Q9D1C8 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gm8652-201ENSMUST00000181363 964 ntBASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Gm15222-202ENSMUST00000228667 1726 ntBASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Vps28Q9D1C8 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Gm10040-201ENSMUST00000080726 1662 ntBASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Gm5687-201ENSMUST00000118252 640 ntBASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Gm13829-201ENSMUST00000119600 138 ntBASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Gm6266-201ENSMUST00000203844 806 ntBASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Vps28Q9D1C8 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Gm42928-201ENSMUST00000197338 3339 ntBASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Vps28Q9D1C8 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 90.8 ms