Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Ddx28Q9CWT6 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Gm21470-201ENSMUST00000187680 696 ntBASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Gm38294-201ENSMUST00000192831 381 ntBASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Ddx28Q9CWT6 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Ddx28Q9CWT6 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm13453-201ENSMUST00000118708 357 ntBASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm3436-201ENSMUST00000179930 840 ntBASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm43703-201ENSMUST00000200523 763 ntBASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Gm6888-201ENSMUST00000221983 706 ntBASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC12.45□□□□□ -0.42
Ddx28Q9CWT6 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Ddx28Q9CWT6 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms