Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm45706-201ENSMUST00000213063 2136 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm16215-201ENSMUST00000161990 637 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm7730-201ENSMUST00000212486 454 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm19220-201ENSMUST00000222682 803 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 AC192088.1-201ENSMUST00000227561 301 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trim11Q99PQ2 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 AC124732.1-201ENSMUST00000221551 910 ntBASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 AC164107.1-201ENSMUST00000227730 2161 ntBASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Gm10176-201ENSMUST00000159707 2264 ntBASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim11Q99PQ2 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Gm12416-201ENSMUST00000120911 1008 ntBASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC15.12■□□□□ 0.01
Trim11Q99PQ2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Gm42550-201ENSMUST00000201553 960 ntBASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim11Q99PQ2 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms