Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm12537-201ENSMUST00000119266 1002 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm12070-201ENSMUST00000119551 1002 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm12671-201ENSMUST00000119978 1002 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm13292-201ENSMUST00000120014 1000 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm12403-201ENSMUST00000121384 959 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm10359-201ENSMUST00000180167 1002 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm12033-201ENSMUST00000180654 1002 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm5559-201ENSMUST00000180755 1002 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm4335-201ENSMUST00000182581 1004 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm8000-201ENSMUST00000188378 592 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Scaf4Q6PFF0 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scaf4Q6PFF0 Gm37015-201ENSMUST00000192763 1521 ntBASIC13.08□□□□□ -0.31
Scaf4Q6PFF0 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scaf4Q6PFF0 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Scaf4Q6PFF0 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Scaf4Q6PFF0 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Gm27772-201ENSMUST00000184900 187 ntBASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Scaf4Q6PFF0 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Gm7774-201ENSMUST00000200064 533 ntBASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Gm18905-201ENSMUST00000205454 928 ntBASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Scaf4Q6PFF0 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms