Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Gm13316-201ENSMUST00000140537 691 ntBASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Gm8738-201ENSMUST00000172606 329 ntBASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Upf3aQ3ULJ3 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm10434-201ENSMUST00000101158 471 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Mir433-201ENSMUST00000093564 124 ntBASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Upf3aQ3ULJ3 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Upf3aQ3ULJ3 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms