Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Mir8109-201ENSMUST00000184375 117 ntBASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Gm45930-201ENSMUST00000221330 292 ntBASIC14.4□□□□□ -0.1
Trim54Q9ERP3 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim54Q9ERP3 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
Trim54Q9ERP3 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 AC133598.1-201ENSMUST00000224327 660 ntBASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
Trim54Q9ERP3 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Gm14723-201ENSMUST00000118686 215 ntBASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Gm25261-201ENSMUST00000157416 134 ntBASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Gm27501-201ENSMUST00000183599 107 ntBASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Gm44069-201ENSMUST00000204898 506 ntBASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Gm17383-201ENSMUST00000078739 1041 ntBASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim54Q9ERP3 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms