Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm45638-201ENSMUST00000211507 2878 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Gm45668-201ENSMUST00000211271 493 ntBASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 AC122314.1-201ENSMUST00000223056 2239 ntBASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ddx56Q9D0R4 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 AC096628.2-201ENSMUST00000225443 1413 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm44397-201ENSMUST00000195950 113 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 CT573086.1-201ENSMUST00000227202 1074 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 AC134335.2-201ENSMUST00000227660 440 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm43423-201ENSMUST00000198390 2094 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Ddx56Q9D0R4 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Gm15429-201ENSMUST00000151268 798 ntBASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 431.8 ms