Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.79□□□□□ -0.36
ClpbQ60649 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
ClpbQ60649 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
ClpbQ60649 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ClpbQ60649 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
ClpbQ60649 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
ClpbQ60649 Gm45638-201ENSMUST00000211507 2878 ntBASIC12.79□□□□□ -0.36
ClpbQ60649 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.79□□□□□ -0.36
ClpbQ60649 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.78□□□□□ -0.36
ClpbQ60649 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.78□□□□□ -0.36
ClpbQ60649 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
ClpbQ60649 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.78□□□□□ -0.36
ClpbQ60649 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
ClpbQ60649 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.78□□□□□ -0.36
ClpbQ60649 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC12.78□□□□□ -0.36
ClpbQ60649 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.78□□□□□ -0.36
ClpbQ60649 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
ClpbQ60649 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
ClpbQ60649 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC12.78□□□□□ -0.36
ClpbQ60649 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Gm20632-201ENSMUST00000176760 2427 ntBASIC12.78□□□□□ -0.36
ClpbQ60649 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ClpbQ60649 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
ClpbQ60649 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
ClpbQ60649 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.77□□□□□ -0.36
ClpbQ60649 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.77□□□□□ -0.36
ClpbQ60649 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.77□□□□□ -0.36
ClpbQ60649 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
ClpbQ60649 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ClpbQ60649 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm26464-201ENSMUST00000157094 305 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm9002-201ENSMUST00000178437 499 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm18187-201ENSMUST00000196476 984 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.77□□□□□ -0.37
ClpbQ60649 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
ClpbQ60649 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
ClpbQ60649 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.77□□□□□ -0.37
ClpbQ60649 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ClpbQ60649 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ClpbQ60649 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms