Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm9755-201ENSMUST00000032981 1356 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm25214-201ENSMUST00000104573 129 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Prl8a6-203ENSMUST00000110355 843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm13744-201ENSMUST00000118953 850 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm11783-201ENSMUST00000119549 885 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm5257-201ENSMUST00000121823 790 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm11354-201ENSMUST00000121974 422 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm8089-201ENSMUST00000122463 968 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm22764-201ENSMUST00000158370 92 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm29538-201ENSMUST00000190783 471 ntTSL 2 BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm37973-201ENSMUST00000195767 1289 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm5950-201ENSMUST00000213337 772 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 AC134537.1-201ENSMUST00000219205 265 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 AC152169.2-201ENSMUST00000224558 613 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm9996-201ENSMUST00000070359 913 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Mir497b-201ENSMUST00000093601 125 ntBASIC13.13□□□□□ -0.31
Col9a1Q05722 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col9a1Q05722 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Skint10-201ENSMUST00000060327 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm16440-201ENSMUST00000100900 1089 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm21103-201ENSMUST00000112737 984 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm12943-201ENSMUST00000119616 210 ntBASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm3047-201ENSMUST00000164069 822 ntAPPRIS P5 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm3029-201ENSMUST00000168306 984 ntAPPRIS P5 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm17208-201ENSMUST00000168388 535 ntBASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm7876-201ENSMUST00000169465 984 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm3043-201ENSMUST00000170639 821 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Mir6998-201ENSMUST00000183343 64 ntBASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm29018-201ENSMUST00000188707 925 ntTSL 3 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm9136-201ENSMUST00000193368 454 ntBASIC13.12□□□□□ -0.31
Col9a1Q05722 4930557J02Rik-201ENSMUST00000202325 1075 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 AC154264.1-201ENSMUST00000216064 386 ntTSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Col9a1Q05722 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC13.12□□□□□ -0.31
Col9a1Q05722 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 AC158595.1-201ENSMUST00000217989 1435 ntBASIC13.12□□□□□ -0.31
Col9a1Q05722 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col9a1Q05722 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.11□□□□□ -0.31
Col9a1Q05722 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col9a1Q05722 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC13.11□□□□□ -0.31
Col9a1Q05722 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col9a1Q05722 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col9a1Q05722 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col9a1Q05722 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col9a1Q05722 Mir671-201ENSMUST00000102432 98 ntBASIC13.11□□□□□ -0.31
Col9a1Q05722 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col9a1Q05722 Dcpp3-201ENSMUST00000115428 610 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Col9a1Q05722 Pbdc1-202ENSMUST00000119477 1239 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms