Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Gm12485-201ENSMUST00000119641 291 ntBASIC14.4□□□□□ -0.1
RaraP11416 Gm15376-201ENSMUST00000122258 783 ntBASIC14.4□□□□□ -0.1
RaraP11416 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC14.4□□□□□ -0.1
RaraP11416 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC14.4□□□□□ -0.1
RaraP11416 AC139580.1-202ENSMUST00000223574 928 ntBASIC14.4□□□□□ -0.1
RaraP11416 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.4□□□□□ -0.1
RaraP11416 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RaraP11416 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RaraP11416 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RaraP11416 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.39□□□□□ -0.11
RaraP11416 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
RaraP11416 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RaraP11416 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.39□□□□□ -0.11
RaraP11416 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RaraP11416 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RaraP11416 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.39□□□□□ -0.11
RaraP11416 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC14.39□□□□□ -0.11
RaraP11416 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
RaraP11416 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.39□□□□□ -0.11
RaraP11416 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RaraP11416 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RaraP11416 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC14.38□□□□□ -0.11
RaraP11416 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.38□□□□□ -0.11
RaraP11416 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
RaraP11416 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Gm12151-201ENSMUST00000121374 290 ntBASIC14.38□□□□□ -0.11
RaraP11416 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.38□□□□□ -0.11
RaraP11416 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Gm29608-201ENSMUST00000190444 463 ntBASIC14.38□□□□□ -0.11
RaraP11416 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC14.38□□□□□ -0.11
RaraP11416 Gm5279-201ENSMUST00000199575 745 ntBASIC14.38□□□□□ -0.11
RaraP11416 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.38□□□□□ -0.11
RaraP11416 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.38□□□□□ -0.11
RaraP11416 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RaraP11416 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RaraP11416 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC14.38□□□□□ -0.11
RaraP11416 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RaraP11416 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC14.37□□□□□ -0.11
RaraP11416 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.37□□□□□ -0.11
RaraP11416 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
RaraP11416 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.37□□□□□ -0.11
RaraP11416 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Gm26464-201ENSMUST00000157094 305 ntBASIC14.37□□□□□ -0.11
RaraP11416 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Mir6956-201ENSMUST00000183598 62 ntBASIC14.37□□□□□ -0.11
RaraP11416 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Gm20445-201ENSMUST00000061905 565 ntBASIC14.37□□□□□ -0.11
RaraP11416 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RaraP11416 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms