Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Hmgb3O54879 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Hmgb3O54879 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm42748-201ENSMUST00000199354 2341 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm7114-201ENSMUST00000190159 1789 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Trp73-205ENSMUST00000133533 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm6973-201ENSMUST00000117080 721 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm9103-201ENSMUST00000119371 405 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm11543-201ENSMUST00000120758 370 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Mir5126-201ENSMUST00000175513 77 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Mir8098-201ENSMUST00000184011 137 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC10.98□□□□□ -0.65
Hmgb3O54879 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 AC164107.1-201ENSMUST00000227730 2161 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm8775-201ENSMUST00000170943 1327 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm44401-201ENSMUST00000204462 2375 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
Hmgb3O54879 Gm37472-201ENSMUST00000192342 4052 ntBASIC10.98□□□□□ -0.65
Hmgb3O54879 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Nhsl1-201ENSMUST00000037341 7321 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gm20554-201ENSMUST00000177421 2352 ntBASIC10.97□□□□□ -0.65
Hmgb3O54879 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC10.97□□□□□ -0.65
Hmgb3O54879 AA543401-201ENSMUST00000164248 1269 ntBASIC10.97□□□□□ -0.65
Hmgb3O54879 CT030684.1-201ENSMUST00000227292 914 ntBASIC10.97□□□□□ -0.65
Hmgb3O54879 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 AC154527.4-201ENSMUST00000224364 1667 ntBASIC10.97□□□□□ -0.65
Hmgb3O54879 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC10.97□□□□□ -0.65
Hmgb3O54879 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Hmgb3O54879 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 128.5 ms