Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ddx56Q9D0R4 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Gm15823-201ENSMUST00000064305 670 ntBASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Gm26315-201ENSMUST00000083890 321 ntBASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.02□□□□□ -0.17
Ddx56Q9D0R4 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.01□□□□□ -0.17
Ddx56Q9D0R4 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm5989-201ENSMUST00000096092 2077 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm15459-201ENSMUST00000117405 1941 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm8355-201ENSMUST00000177767 1941 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm9755-201ENSMUST00000032981 1356 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Mypopos-202ENSMUST00000205975 2321 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Gm6983-201ENSMUST00000214912 628 ntBASIC14□□□□□ -0.17
Ddx56Q9D0R4 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Ddx56Q9D0R4 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 80.8 ms