Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Cdk5rap3Q99LM2 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Cdk5rap3Q99LM2 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.84□□□□□ -0.19
Cdk5rap3Q99LM2 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC13.84□□□□□ -0.19
Cdk5rap3Q99LM2 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Cdk5rap3Q99LM2 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm14730-201ENSMUST00000122378 1045 ntBASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm37935-201ENSMUST00000192012 982 ntBASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm17795-201ENSMUST00000214505 757 ntBASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdk5rap3Q99LM2 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Gm13886-201ENSMUST00000117876 1183 ntBASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Gm45841-201ENSMUST00000207700 164 ntBASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC13.82□□□□□ -0.2
Cdk5rap3Q99LM2 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Mir7221-201ENSMUST00000184009 72 ntBASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdk5rap3Q99LM2 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms