Protein–RNA interactions for Protein: Q1W617

Shroom4, Protein Shroom4, mousemouse

Predictions only

Length 1,475 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom4Q1W617 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Gm13296-201ENSMUST00000117854 997 ntBASIC20.68■□□□□ 0.9
Shroom4Q1W617 Gm13315-201ENSMUST00000120376 991 ntBASIC20.68■□□□□ 0.9
Shroom4Q1W617 Gm19187-201ENSMUST00000206781 892 ntBASIC20.68■□□□□ 0.9
Shroom4Q1W617 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC20.68■□□□□ 0.9
Shroom4Q1W617 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom4Q1W617 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Gm12015-201ENSMUST00000117065 843 ntBASIC20.67■□□□□ 0.9
Shroom4Q1W617 Gm12201-201ENSMUST00000120657 1234 ntBASIC20.67■□□□□ 0.9
Shroom4Q1W617 Gm14999-201ENSMUST00000121039 624 ntBASIC20.67■□□□□ 0.9
Shroom4Q1W617 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom4Q1W617 Gm43823-201ENSMUST00000197391 1808 ntBASIC20.67■□□□□ 0.9
Shroom4Q1W617 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Gm44651-201ENSMUST00000207343 372 ntBASIC20.66■□□□□ 0.9
Shroom4Q1W617 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom4Q1W617 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Gm43378-201ENSMUST00000199336 582 ntBASIC20.65■□□□□ 0.9
Shroom4Q1W617 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom4Q1W617 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Shroom4Q1W617 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shroom4Q1W617 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
Shroom4Q1W617 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shroom4Q1W617 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Shroom4Q1W617 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shroom4Q1W617 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Shroom4Q1W617 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Shroom4Q1W617 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 51.2 ms