Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.71□□□□□ -0.21
Msx3P70354 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Msx3P70354 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx3P70354 Gm43570-201ENSMUST00000199951 3688 ntBASIC13.71□□□□□ -0.22
Msx3P70354 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Msx3P70354 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Msx3P70354 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx3P70354 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Msx3P70354 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Msx3P70354 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 AC122314.1-201ENSMUST00000223056 2239 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.7□□□□□ -0.22
Msx3P70354 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Msx3P70354 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Ldha-ps-201ENSMUST00000119390 995 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Gm16215-201ENSMUST00000161990 637 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Msx3P70354 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Gm42612-201ENSMUST00000197986 623 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Gm43170-201ENSMUST00000199827 612 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Msx3P70354 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC13.7□□□□□ -0.22
Msx3P70354 AC124732.1-201ENSMUST00000221551 910 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Msx3P70354 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.7□□□□□ -0.22
Msx3P70354 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Msx3P70354 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.69□□□□□ -0.22
Msx3P70354 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Ldb3-207ENSMUST00000227819 1499 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Msx3P70354 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Gm38223-201ENSMUST00000194484 695 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Gm19931-201ENSMUST00000198920 368 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.69□□□□□ -0.22
Msx3P70354 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 CT573086.1-201ENSMUST00000227202 1074 ntBASIC13.69□□□□□ -0.22
Msx3P70354 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Msx3P70354 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
Msx3P70354 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Msx3P70354 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.69□□□□□ -0.22
Msx3P70354 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms