Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Gm6912-201ENSMUST00000117218 544 ntBASIC15.92■□□□□ 0.14
Rfx1P48377 Gm6415-201ENSMUST00000118488 348 ntBASIC15.92■□□□□ 0.14
Rfx1P48377 Gm24158-201ENSMUST00000175263 71 ntBASIC15.92■□□□□ 0.14
Rfx1P48377 Gm8000-201ENSMUST00000188378 592 ntBASIC15.92■□□□□ 0.14
Rfx1P48377 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Rfx1P48377 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
Rfx1P48377 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Rfx1P48377 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Rfx1P48377 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Rfx1P48377 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Rfx1P48377 Gm46209-201ENSMUST00000217912 553 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC15.91■□□□□ 0.14
Rfx1P48377 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Rnf17-202ENSMUST00000223627 2077 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Gm45743-201ENSMUST00000212701 2795 ntBASIC15.91■□□□□ 0.14
Rfx1P48377 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Rfx1P48377 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Rfx1P48377 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Rfx1P48377 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Rfx1P48377 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.9■□□□□ 0.14
Rfx1P48377 Gm15770-201ENSMUST00000117498 584 ntBASIC15.9■□□□□ 0.14
Rfx1P48377 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.9■□□□□ 0.14
Rfx1P48377 Ndufaf2-202ENSMUST00000223734 556 ntBASIC15.9■□□□□ 0.14
Rfx1P48377 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Rfx1P48377 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Rfx1P48377 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Gm13517-201ENSMUST00000120782 1495 ntBASIC15.9■□□□□ 0.14
Rfx1P48377 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Rfx1P48377 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Gm8410-201ENSMUST00000117225 605 ntBASIC15.89■□□□□ 0.13
Rfx1P48377 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.89■□□□□ 0.13
Rfx1P48377 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Gm9229-201ENSMUST00000222777 126 ntBASIC15.89■□□□□ 0.13
Rfx1P48377 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC15.89■□□□□ 0.13
Rfx1P48377 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Rfx1P48377 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms