Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col3a1P08121 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Gm15459-201ENSMUST00000117405 1941 ntBASIC15.69■□□□□ 0.1
Col3a1P08121 Gm8355-201ENSMUST00000177767 1941 ntBASIC15.69■□□□□ 0.1
Col3a1P08121 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.69■□□□□ 0.1
Col3a1P08121 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC15.69■□□□□ 0.1
Col3a1P08121 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC15.69■□□□□ 0.1
Col3a1P08121 Gm17376-201ENSMUST00000166016 84 ntBASIC15.69■□□□□ 0.1
Col3a1P08121 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC15.69■□□□□ 0.1
Col3a1P08121 Gm23363-201ENSMUST00000175024 79 ntBASIC15.69■□□□□ 0.1
Col3a1P08121 Mir7070-201ENSMUST00000183657 86 ntBASIC15.69■□□□□ 0.1
Col3a1P08121 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Col3a1P08121 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Col3a1P08121 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 AC167669.2-201ENSMUST00000224417 1620 ntBASIC15.69■□□□□ 0.1
Col3a1P08121 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col3a1P08121 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 Mir874-201ENSMUST00000104769 76 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Gm12749-201ENSMUST00000122138 1159 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC15.68■□□□□ 0.1
Col3a1P08121 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC15.68■□□□□ 0.1
Col3a1P08121 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC15.68■□□□□ 0.1
Col3a1P08121 Gm30285-201ENSMUST00000214614 422 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 Gm9176-201ENSMUST00000219955 1120 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 CT025533.2-201ENSMUST00000228715 1248 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Col3a1P08121 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Col3a1P08121 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col3a1P08121 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col3a1P08121 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC15.68■□□□□ 0.1
Col3a1P08121 Gm37827-201ENSMUST00000194486 1542 ntBASIC15.68■□□□□ 0.1
Col3a1P08121 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.67■□□□□ 0.1
Col3a1P08121 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Gm14921-201ENSMUST00000118643 908 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Gm12502-201ENSMUST00000120197 444 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Gm14726-201ENSMUST00000120623 896 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
Col3a1P08121 Gm27320-201ENSMUST00000184892 109 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Gm18753-201ENSMUST00000201000 566 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Gm3786-201ENSMUST00000202659 378 ntBASIC15.67■□□□□ 0.1
Col3a1P08121 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC15.67■□□□□ 0.1
Col3a1P08121 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC15.67■□□□□ 0.1
Col3a1P08121 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Col3a1P08121 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC15.67■□□□□ 0.1
Col3a1P08121 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col3a1P08121 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms