Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.39□□□□□ -0.59
Col8a1Q00780 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Gm43830-201ENSMUST00000198760 1067 ntBASIC11.39□□□□□ -0.59
Col8a1Q00780 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Gm43947-201ENSMUST00000203019 959 ntBASIC11.39□□□□□ -0.59
Col8a1Q00780 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Col8a1Q00780 AC159649.2-201ENSMUST00000222984 3223 ntBASIC11.39□□□□□ -0.59
Col8a1Q00780 AC102291.3-201ENSMUST00000226566 405 ntBASIC11.39□□□□□ -0.59
Col8a1Q00780 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Col8a1Q00780 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col8a1Q00780 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm5523-201ENSMUST00000180415 997 ntBASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC11.38□□□□□ -0.59
Col8a1Q00780 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm45186-201ENSMUST00000206874 478 ntBASIC11.38□□□□□ -0.59
Col8a1Q00780 Rn7sk-201ENSMUST00000083103 331 ntBASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm26315-201ENSMUST00000083890 321 ntBASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 78 ms