Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.76□□□□□ -0.37
Msx1P13297 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm43339-201ENSMUST00000200032 1606 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Msx1P13297 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Gm5797-201ENSMUST00000100886 997 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Gm3149-201ENSMUST00000112779 997 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Rpa3-201ENSMUST00000012627 670 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC12.75□□□□□ -0.37
Msx1P13297 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Gm17066-202ENSMUST00000165350 1113 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Gm8362-202ENSMUST00000170673 997 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.75□□□□□ -0.37
Msx1P13297 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Gm26812-202ENSMUST00000181776 599 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Gm29649-201ENSMUST00000185649 419 ntBASIC12.75□□□□□ -0.37
Msx1P13297 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Tfpi2-201ENSMUST00000031674 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msx1P13297 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msx1P13297 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Msx1P13297 Il17rd-203ENSMUST00000225146 3366 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Gm11405-201ENSMUST00000118689 1556 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Msx1P13297 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.74□□□□□ -0.37
Msx1P13297 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Gm13385-201ENSMUST00000121089 220 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
Msx1P13297 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Gm19078-201ENSMUST00000206311 727 ntBASIC12.74□□□□□ -0.37
Msx1P13297 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC12.74□□□□□ -0.37
Msx1P13297 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.74□□□□□ -0.37
Msx1P13297 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.74□□□□□ -0.37
Msx1P13297 AC102569.1-204ENSMUST00000222816 793 ntTSL 3 BASIC12.74□□□□□ -0.37
Msx1P13297 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.74□□□□□ -0.37
Msx1P13297 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.74□□□□□ -0.37
Msx1P13297 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.74□□□□□ -0.37
Msx1P13297 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Msx1P13297 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 1700011I03Rik-201ENSMUST00000079738 1013 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx1P13297 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms