Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Lire1P11260 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.73□□□□□ -0.37
Lire1P11260 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.73□□□□□ -0.37
Lire1P11260 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Lire1P11260 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Lire1P11260 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC12.73□□□□□ -0.37
Lire1P11260 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Lire1P11260 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Lire1P11260 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Lire1P11260 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Lire1P11260 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC12.72□□□□□ -0.37
Lire1P11260 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Gm29667-201ENSMUST00000190817 490 ntBASIC12.72□□□□□ -0.37
Lire1P11260 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.72□□□□□ -0.37
Lire1P11260 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Gm9182-201ENSMUST00000217829 639 ntBASIC12.72□□□□□ -0.37
Lire1P11260 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Lire1P11260 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Lire1P11260 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Lire1P11260 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.71□□□□□ -0.37
Lire1P11260 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Lire1P11260 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Lire1P11260 Gm6756-201ENSMUST00000180647 1620 ntBASIC12.71□□□□□ -0.37
Lire1P11260 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.71□□□□□ -0.37
Lire1P11260 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC12.71□□□□□ -0.37
Lire1P11260 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.71□□□□□ -0.37
Lire1P11260 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.71□□□□□ -0.37
Lire1P11260 Gm16476-201ENSMUST00000221544 139 ntBASIC12.71□□□□□ -0.37
Lire1P11260 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Lire1P11260 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Lire1P11260 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Lire1P11260 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Lire1P11260 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lire1P11260 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Lire1P11260 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lire1P11260 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC12.71□□□□□ -0.38
Lire1P11260 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.71□□□□□ -0.38
Lire1P11260 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms