Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Col3a1P08121 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col3a1P08121 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col3a1P08121 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col3a1P08121 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col3a1P08121 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col3a1P08121 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Gm10434-201ENSMUST00000101158 471 ntBASIC15.72■□□□□ 0.11
Col3a1P08121 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC15.72■□□□□ 0.11
Col3a1P08121 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC15.72■□□□□ 0.11
Col3a1P08121 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC15.72■□□□□ 0.11
Col3a1P08121 Gm7118-201ENSMUST00000200167 1003 ntBASIC15.72■□□□□ 0.11
Col3a1P08121 Gm43068-201ENSMUST00000201095 1273 ntBASIC15.72■□□□□ 0.11
Col3a1P08121 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC15.72■□□□□ 0.11
Col3a1P08121 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.72■□□□□ 0.11
Col3a1P08121 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.72■□□□□ 0.11
Col3a1P08121 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col3a1P08121 Mir877-201ENSMUST00000104738 85 ntBASIC15.71■□□□□ 0.11
Col3a1P08121 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Gm13492-201ENSMUST00000119772 665 ntBASIC15.71■□□□□ 0.11
Col3a1P08121 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Col3a1P08121 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Col3a1P08121 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Col3a1P08121 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Col3a1P08121 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col3a1P08121 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Col3a1P08121 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Col3a1P08121 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.71■□□□□ 0.1
Col3a1P08121 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC15.71■□□□□ 0.1
Col3a1P08121 Gm20482-202ENSMUST00000174729 825 ntBASIC15.71■□□□□ 0.1
Col3a1P08121 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.71■□□□□ 0.1
Col3a1P08121 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC15.71■□□□□ 0.1
Col3a1P08121 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Col3a1P08121 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col3a1P08121 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC15.71■□□□□ 0.1
Col3a1P08121 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.7■□□□□ 0.1
Col3a1P08121 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Col3a1P08121 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col3a1P08121 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Col3a1P08121 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col3a1P08121 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Col3a1P08121 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col3a1P08121 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Gm8908-201ENSMUST00000121633 1024 ntBASIC15.7■□□□□ 0.1
Col3a1P08121 Gm14381-201ENSMUST00000122105 414 ntBASIC15.7■□□□□ 0.1
Col3a1P08121 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.7■□□□□ 0.1
Col3a1P08121 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Col3a1P08121 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC15.7■□□□□ 0.1
Col3a1P08121 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC15.7■□□□□ 0.1
Col3a1P08121 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.7■□□□□ 0.1
Col3a1P08121 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col3a1P08121 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms