Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sf3b1Q99NB9 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm13369-201ENSMUST00000119442 987 ntBASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm37497-201ENSMUST00000195830 798 ntBASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm42853-201ENSMUST00000201273 1387 ntBASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sf3b1Q99NB9 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sf3b1Q99NB9 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm14350-201ENSMUST00000116642 640 ntBASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm15198-201ENSMUST00000117283 177 ntBASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm6013-201ENSMUST00000212264 699 ntBASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Sf3b1Q99NB9 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms