Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm12539-201ENSMUST00000121549 1098 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm37042-201ENSMUST00000193816 581 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm38297-201ENSMUST00000195122 1057 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm18054-201ENSMUST00000207539 555 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Usp47Q8BY87 AC135669.1-202ENSMUST00000216742 540 ntBASIC18.78■□□□□ 0.6
Usp47Q8BY87 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC18.78■□□□□ 0.6
Usp47Q8BY87 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Gm14371-201ENSMUST00000138925 1518 ntBASIC18.77■□□□□ 0.6
Usp47Q8BY87 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Gm17420-201ENSMUST00000164753 153 ntBASIC18.77■□□□□ 0.6
Usp47Q8BY87 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Gm4935-201ENSMUST00000221316 1198 ntBASIC18.77■□□□□ 0.6
Usp47Q8BY87 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp47Q8BY87 Gm10478-201ENSMUST00000084451 396 ntBASIC18.77■□□□□ 0.6
Usp47Q8BY87 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Usp47Q8BY87 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC18.77■□□□□ 0.59
Usp47Q8BY87 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Snord83b-201ENSMUST00000104546 94 ntBASIC18.76■□□□□ 0.59
Usp47Q8BY87 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Usp47Q8BY87 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Gm25927-201ENSMUST00000175058 117 ntBASIC18.76■□□□□ 0.59
Usp47Q8BY87 Gm6222-202ENSMUST00000182143 629 ntBASIC18.76■□□□□ 0.59
Usp47Q8BY87 Gm9924-202ENSMUST00000192760 2311 ntBASIC18.76■□□□□ 0.59
Usp47Q8BY87 Gm6007-201ENSMUST00000208170 823 ntBASIC18.76■□□□□ 0.59
Usp47Q8BY87 Gm32025-201ENSMUST00000217960 307 ntBASIC18.76■□□□□ 0.59
Usp47Q8BY87 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp47Q8BY87 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Gm18244-201ENSMUST00000219747 1566 ntBASIC18.75■□□□□ 0.59
Usp47Q8BY87 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 AC166051.1-201ENSMUST00000214313 210 ntBASIC18.75■□□□□ 0.59
Usp47Q8BY87 Snora73a-201ENSMUST00000082453 205 ntBASIC18.75■□□□□ 0.59
Usp47Q8BY87 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC18.75■□□□□ 0.59
Usp47Q8BY87 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms