Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Cdh11P55288 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.22□□□□□ -0.45
Cdh11P55288 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Cdh11P55288 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.22□□□□□ -0.45
Cdh11P55288 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Cdh11P55288 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Gm5186-201ENSMUST00000218781 920 ntBASIC12.22□□□□□ -0.45
Cdh11P55288 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.22□□□□□ -0.45
Cdh11P55288 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Cdh11P55288 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Cdh11P55288 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Cdh11P55288 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Cdh11P55288 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Cdh11P55288 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.45
Cdh11P55288 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Cdh11P55288 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Gm15321-201ENSMUST00000121290 288 ntBASIC12.21□□□□□ -0.45
Cdh11P55288 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Cdh11P55288 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC12.21□□□□□ -0.45
Cdh11P55288 Gm29667-201ENSMUST00000190817 490 ntBASIC12.21□□□□□ -0.45
Cdh11P55288 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.21□□□□□ -0.45
Cdh11P55288 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.21□□□□□ -0.45
Cdh11P55288 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Cdh11P55288 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Cdh11P55288 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.21□□□□□ -0.46
Cdh11P55288 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdh11P55288 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Cdh11P55288 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Cdh11P55288 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdh11P55288 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdh11P55288 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.21□□□□□ -0.46
Cdh11P55288 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Cdh11P55288 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.21□□□□□ -0.46
Cdh11P55288 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.21□□□□□ -0.46
Cdh11P55288 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdh11P55288 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC12.2□□□□□ -0.46
Cdh11P55288 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Cdh11P55288 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdh11P55288 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
Cdh11P55288 Gm11424-201ENSMUST00000121929 829 ntBASIC12.2□□□□□ -0.46
Cdh11P55288 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.2□□□□□ -0.46
Cdh11P55288 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.2□□□□□ -0.46
Cdh11P55288 Gm5745-201ENSMUST00000183748 313 ntBASIC12.2□□□□□ -0.46
Cdh11P55288 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.2□□□□□ -0.46
Cdh11P55288 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Cdh11P55288 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Cdh11P55288 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms