Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Rfx3P48381 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Rfx3P48381 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC12.11□□□□□ -0.47
Rfx3P48381 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Rfx3P48381 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC12.11□□□□□ -0.47
Rfx3P48381 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC12.11□□□□□ -0.47
Rfx3P48381 Gm13385-201ENSMUST00000121089 220 ntBASIC12.11□□□□□ -0.47
Rfx3P48381 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.11□□□□□ -0.47
Rfx3P48381 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.11□□□□□ -0.47
Rfx3P48381 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.11□□□□□ -0.47
Rfx3P48381 AC158982.1-201ENSMUST00000228377 901 ntBASIC12.11□□□□□ -0.47
Rfx3P48381 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Rfx3P48381 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Rfx3P48381 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
Rfx3P48381 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.11□□□□□ -0.47
Rfx3P48381 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
Rfx3P48381 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Rfx3P48381 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC12.1□□□□□ -0.47
Rfx3P48381 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.1□□□□□ -0.47
Rfx3P48381 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC12.1□□□□□ -0.47
Rfx3P48381 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Gm43703-201ENSMUST00000200523 763 ntBASIC12.1□□□□□ -0.47
Rfx3P48381 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Rfx3P48381 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Rfx3P48381 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Rfx3P48381 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Rfx3P48381 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Rfx3P48381 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Rfx3P48381 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 71.7 ms