Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Msx1P13297 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Msx1P13297 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.78□□□□□ -0.36
Msx1P13297 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
Msx1P13297 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Msx1P13297 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC12.77□□□□□ -0.36
Msx1P13297 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Msx1P13297 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC12.77□□□□□ -0.37
Msx1P13297 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.77□□□□□ -0.37
Msx1P13297 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.77□□□□□ -0.37
Msx1P13297 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC12.77□□□□□ -0.37
Msx1P13297 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.77□□□□□ -0.37
Msx1P13297 Rian-215ENSMUST00000183180 633 ntTSL 5 BASIC12.77□□□□□ -0.37
Msx1P13297 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.77□□□□□ -0.37
Msx1P13297 Gm43066-201ENSMUST00000199589 1260 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Gm18905-201ENSMUST00000205454 928 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.77□□□□□ -0.37
Msx1P13297 AC172027.1-201ENSMUST00000217659 337 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Msx1P13297 AC165260.5-201ENSMUST00000224640 1247 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Gm6091-201ENSMUST00000098307 165 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Gm8337-201ENSMUST00000187358 1938 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.77□□□□□ -0.37
Msx1P13297 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 4930589L23Rik-201ENSMUST00000091023 1364 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.77□□□□□ -0.37
Msx1P13297 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.77□□□□□ -0.37
Msx1P13297 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Msx1P13297 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Msx1P13297 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm19863-201ENSMUST00000192480 2218 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm12928-201ENSMUST00000117115 573 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Gm15240-201ENSMUST00000118156 720 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.76□□□□□ -0.37
Msx1P13297 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm8927-201ENSMUST00000181978 981 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Gm29127-201ENSMUST00000188304 517 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Gm44785-201ENSMUST00000207379 620 ntTSL 5 BASIC12.76□□□□□ -0.37
Msx1P13297 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Msx1P13297 Gm3222-201ENSMUST00000071282 990 ntBASIC12.76□□□□□ -0.37
Msx1P13297 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 85.1 ms