Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Gm43134-201ENSMUST00000199434 1886 ntBASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps54Q5SPW0 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm4984-201ENSMUST00000115987 360 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm10156-201ENSMUST00000122364 462 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm27847-201ENSMUST00000183711 107 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm27375-201ENSMUST00000183799 107 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 AC155237.1-201ENSMUST00000226196 1279 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 AC096628.2-201ENSMUST00000225443 1413 ntBASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps54Q5SPW0 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Zscan30-202ENSMUST00000224144 1458 ntBASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 AC154595.3-201ENSMUST00000224579 384 ntBASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps54Q5SPW0 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms